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Comment: Problem finding certain variables when importing a public database GSE73103
by
Yveto
• 0
Thanks for your response.
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
Michael Love
42k
try `traceback()` that may help the developer figure out what's going on. Or you can make a reproducible example, with `makeExampleDESeqD…
Answer: normalization across different species for DESeq2 analysis
by
Michael Love
42k
There are many posts on this topic, in addition to that one: https://www.google.com/search?q=site%3Asupport.bioconductor.org+DESeq2+acro…
Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
by
Ashley
• 0
Hi Gordon, thank you for replying! I've updated the original post to include code.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.
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Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
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